Sir Henry Jones was born 30 November 1852 in Llangernyw in Denbighshire, Wales, the son of Elias Jones and Elizabeth Williams. He left school at the age of twelve to be an apprentice to his father, a shoemaker, but managed to complete his education and became a teacher as well as a Presbyterian minister. With a scholarship in 1875 he enrolled at the University of Glasgow, studying philosophy under former Gifford lecturer Edward Caird, and graduated in 1878.